Variant report

Variant	rs73420074
Chromosome Location	chr15:60830081-60830082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:60826322..60829017-chr15:60829642..60832033,2	MCF-7	breast:
2	chr15:60830003..60832382-chr15:60837571..60839170,2	K562	blood:
3	chr15:60829900..60831611-chr15:61102871..61104667,2	K562	blood:
4	chr15:60829721..60832392-chr15:60832780..60835577,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58133055	1.00[AMR][1000 genomes]
rs58443081	1.00[AMR][1000 genomes]
rs60716962	1.00[AMR][1000 genomes]
rs73420072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525850	chr15:60827430-60833019	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60772800-60846800	Weak transcription	Primary B cells from cord blood	blood
2	chr15:60794800-60830400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:60804200-60850200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:60804800-60837400	Weak transcription	Fetal Intestine Small	intestine
5	chr15:60806800-60834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:60806800-60834600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:60806800-60849600	Weak transcription	Aorta	Aorta
8	chr15:60807000-60834200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:60812400-60834600	Weak transcription	Gastric	stomach
10	chr15:60813000-60830400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr15:60813000-60830600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:60816000-60834400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:60818600-60833400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:60818600-60834400	Weak transcription	Spleen	Spleen
15	chr15:60818600-60834600	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:60818800-60834400	Weak transcription	Fetal Kidney	kidney
17	chr15:60820000-60833600	Weak transcription	Fetal Brain Female	brain
18	chr15:60821200-60832600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:60821200-60833600	Weak transcription	Right Ventricle	heart
20	chr15:60821200-60834000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:60821400-60833800	Weak transcription	Fetal Heart	heart
22	chr15:60822400-60834400	Weak transcription	Lung	lung
23	chr15:60822400-60842400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr15:60822600-60834600	Weak transcription	Ovary	ovary
25	chr15:60823000-60830200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:60823600-60844200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:60823600-60844600	Weak transcription	HepG2	liver
28	chr15:60824200-60834000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:60824200-60834200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:60824200-60838000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:60824600-60834000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr15:60824600-60838200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr15:60824600-60845600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr15:60825200-60846000	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr15:60825400-60838400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr15:60826200-60832600	Weak transcription	GM12878-XiMat	blood
37	chr15:60827400-60830200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:60827400-60833600	Weak transcription	Fetal Brain Male	brain
39	chr15:60827600-60830200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:60827600-60830800	Weak transcription	Brain Germinal Matrix	brain
41	chr15:60827600-60833600	Weak transcription	Brain Substantia Nigra	brain
42	chr15:60827600-60833800	Weak transcription	Brain Angular Gyrus	brain
43	chr15:60827800-60833000	Weak transcription	Brain Anterior Caudate	brain
44	chr15:60827800-60833800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr15:60827800-60834400	Weak transcription	Left Ventricle	heart
46	chr15:60828400-60831400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:60828400-60833800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:60828600-60831600	Enhancers	Psoas Muscle	Psoas
49	chr15:60828600-60833600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:60828800-60838600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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