Variant report

Variant	rs58136416
Chromosome Location	chr3:135653910-135653911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1403765	0.83[AFR][1000 genomes]
rs16843517	0.83[AFR][1000 genomes]
rs16843565	0.83[AFR][1000 genomes]
rs16843571	0.83[AFR][1000 genomes]
rs16843601	0.83[AFR][1000 genomes]
rs16843602	0.83[AFR][1000 genomes]
rs16843656	0.83[AFR][1000 genomes]
rs57507646	0.83[AFR][1000 genomes]
rs57524286	0.83[AFR][1000 genomes]
rs57539640	0.83[AFR][1000 genomes]
rs57578189	0.83[AFR][1000 genomes]
rs57681844	0.83[AFR][1000 genomes]
rs58362057	0.83[AFR][1000 genomes]
rs58619345	0.83[AFR][1000 genomes]
rs59899876	0.83[AFR][1000 genomes]
rs59985031	0.83[AFR][1000 genomes]
rs61216931	0.83[AFR][1000 genomes]
rs72979647	0.83[AFR][1000 genomes]
rs72979686	0.83[AFR][1000 genomes]
rs72979693	0.83[AFR][1000 genomes]
rs72979696	0.83[AFR][1000 genomes]
rs72979701	0.83[AFR][1000 genomes]
rs72981436	0.83[AFR][1000 genomes]
rs72981447	0.83[AFR][1000 genomes]
rs72981448	0.83[AFR][1000 genomes]
rs72981456	0.83[AFR][1000 genomes]
rs72981499	0.83[AFR][1000 genomes]
rs72983435	0.83[AFR][1000 genomes]
rs72983458	0.83[AFR][1000 genomes]
rs72983501	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	esv3374702	chr3:135649303-135686527	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135653200-135654200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:135653400-135655800	Enhancers	Placenta	Placenta
3	chr3:135653600-135654000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:135653800-135654400	Enhancers	NHEK	skin

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