Variant report

Variant	rs1403765
Chromosome Location	chr3:135737690-135737691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135697805..135699794-chr3:135735661..135738510,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs16843517	1.00[AFR][1000 genomes]
rs16843565	1.00[AFR][1000 genomes]
rs16843571	1.00[AFR][1000 genomes]
rs16843601	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16843602	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16843633	0.83[YRI][hapmap]
rs16843656	1.00[AFR][1000 genomes]
rs56848754	0.91[AFR][1000 genomes]
rs57507646	1.00[AFR][1000 genomes]
rs57524286	1.00[AFR][1000 genomes]
rs57539640	1.00[AFR][1000 genomes]
rs57578189	1.00[AFR][1000 genomes]
rs57681844	1.00[AFR][1000 genomes]
rs58136416	0.83[AFR][1000 genomes]
rs58362057	1.00[AFR][1000 genomes]
rs58619345	1.00[AFR][1000 genomes]
rs59899876	1.00[AFR][1000 genomes]
rs59985031	1.00[AFR][1000 genomes]
rs61216931	1.00[AFR][1000 genomes]
rs72977692	0.81[AFR][1000 genomes]
rs72977699	0.81[AFR][1000 genomes]
rs72977700	0.81[AFR][1000 genomes]
rs72979626	0.91[AFR][1000 genomes]
rs72979633	0.91[AFR][1000 genomes]
rs72979636	0.91[AFR][1000 genomes]
rs72979647	1.00[AFR][1000 genomes]
rs72979686	1.00[AFR][1000 genomes]
rs72979693	1.00[AFR][1000 genomes]
rs72979696	1.00[AFR][1000 genomes]
rs72979701	1.00[AFR][1000 genomes]
rs72981430	0.83[AFR][1000 genomes]
rs72981436	1.00[AFR][1000 genomes]
rs72981447	1.00[AFR][1000 genomes]
rs72981448	1.00[AFR][1000 genomes]
rs72981456	1.00[AFR][1000 genomes]
rs72981499	1.00[AFR][1000 genomes]
rs72983435	1.00[AFR][1000 genomes]
rs72983458	1.00[AFR][1000 genomes]
rs72983467	0.83[AFR][1000 genomes]
rs72983501	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135707000-135741600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:135717200-135747000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:135718000-135753000	Weak transcription	Fetal Kidney	kidney
4	chr3:135719000-135741600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:135719200-135746200	Weak transcription	Fetal Intestine Large	intestine
6	chr3:135721800-135763600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:135726200-135737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:135726200-135748000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:135726400-135758400	Weak transcription	Lung	lung
10	chr3:135727200-135746600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:135727400-135760600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:135727800-135741600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:135727800-135741600	Weak transcription	Pancreas	Pancrea
14	chr3:135727800-135769400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:135728000-135748000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:135728200-135746400	Weak transcription	Ovary	ovary
17	chr3:135728800-135737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:135735600-135741600	Enhancers	Fetal Heart	heart
19	chr3:135735800-135760600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:135736200-135738600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:135736400-135738600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:135736400-135738600	Enhancers	Stomach Smooth Muscle	stomach
23	chr3:135736400-135738800	Enhancers	Colon Smooth Muscle	Colon
24	chr3:135736600-135738000	Enhancers	Fetal Muscle Leg	muscle
25	chr3:135736600-135738400	Enhancers	Brain Hippocampus Middle	brain
26	chr3:135736800-135737800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:135737000-135737800	Weak transcription	Right Ventricle	heart
28	chr3:135737000-135738200	Enhancers	Fetal Stomach	stomach
29	chr3:135737000-135740000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr3:135737200-135738000	Enhancers	Brain Substantia Nigra	brain
31	chr3:135737200-135738200	Enhancers	Osteobl	bone
32	chr3:135737200-135738800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:135737200-135739800	Enhancers	NHDF-Ad	bronchial
34	chr3:135737200-135743000	Enhancers	Rectal Smooth Muscle	rectum
35	chr3:135737400-135738200	Enhancers	HMEC	breast
36	chr3:135737400-135738200	Enhancers	HSMMtube	muscle
37	chr3:135737400-135738400	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr3:135737400-135742200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr3:135737400-135747200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr3:135737600-135738000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:135737600-135738000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:135737600-135738000	Enhancers	Left Ventricle	heart
43	chr3:135737600-135738000	Enhancers	Psoas Muscle	Psoas
44	chr3:135737600-135738000	Enhancers	Right Atrium	heart
45	chr3:135737600-135738200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:135737600-135738200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:135737600-135738200	Enhancers	Brain Angular Gyrus	brain
48	chr3:135737600-135738200	Enhancers	NHEK	skin
49	chr3:135737600-135738400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:135737600-135738400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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