Variant report

Variant	rs72977692
Chromosome Location	chr3:135613951-135613952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1403765	0.81[AFR][1000 genomes]
rs16843517	0.81[AFR][1000 genomes]
rs16843565	0.81[AFR][1000 genomes]
rs16843571	0.81[AFR][1000 genomes]
rs16843601	0.81[AFR][1000 genomes]
rs16843602	0.81[AFR][1000 genomes]
rs16843656	0.81[AFR][1000 genomes]
rs56848754	0.91[AFR][1000 genomes]
rs57507646	0.81[AFR][1000 genomes]
rs57524286	0.81[AFR][1000 genomes]
rs57539640	0.81[AFR][1000 genomes]
rs57578189	0.81[AFR][1000 genomes]
rs57681844	0.81[AFR][1000 genomes]
rs58362057	0.81[AFR][1000 genomes]
rs58619345	0.81[AFR][1000 genomes]
rs59416508	0.90[AFR][1000 genomes]
rs59899876	0.81[AFR][1000 genomes]
rs59985031	0.81[AFR][1000 genomes]
rs60501626	0.90[AFR][1000 genomes]
rs61216931	0.81[AFR][1000 genomes]
rs72977640	0.90[AFR][1000 genomes]
rs72977670	0.90[AFR][1000 genomes]
rs72977699	1.00[AFR][1000 genomes]
rs72977700	1.00[AFR][1000 genomes]
rs72979626	0.91[AFR][1000 genomes]
rs72979633	0.91[AFR][1000 genomes]
rs72979636	0.91[AFR][1000 genomes]
rs72979647	0.81[AFR][1000 genomes]
rs72979686	0.81[AFR][1000 genomes]
rs72979693	0.81[AFR][1000 genomes]
rs72979696	0.81[AFR][1000 genomes]
rs72979701	0.81[AFR][1000 genomes]
rs72981436	0.81[AFR][1000 genomes]
rs72981447	0.81[AFR][1000 genomes]
rs72981448	0.81[AFR][1000 genomes]
rs72981456	0.81[AFR][1000 genomes]
rs72981499	0.81[AFR][1000 genomes]
rs72983435	0.81[AFR][1000 genomes]
rs72983458	0.81[AFR][1000 genomes]
rs72983501	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135610200-135614200	Weak transcription	HMEC	breast
2	chr3:135613600-135616000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:135613800-135616200	Enhancers	HSMM	muscle
4	chr3:135613800-135617000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:135613800-135617000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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