Variant report

Variant	rs58138632
Chromosome Location	chr10:6138154-6138155
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6137316..6139736-chr10:6243153..6245060,3	MCF-7	breast:
2	chr10:6130789..6132928-chr10:6134999..6139816,5	MCF-7	breast:
3	chr10:6131034..6133733-chr10:6136024..6138552,2	K562	blood:
4	chr10:6136068..6139064-chr10:6145964..6148767,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000134453	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10905861	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11256626	0.88[ASN][1000 genomes]
rs11256664	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256685	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256761	1.00[ASN][1000 genomes]
rs11256763	0.92[ASN][1000 genomes]
rs11256801	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11256810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256854	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11256893	1.00[EUR][1000 genomes]
rs11256895	0.84[ASN][1000 genomes]
rs12252274	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12254328	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12262454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264240	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412910	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12416306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750669	0.89[ASN][1000 genomes]
rs59330649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60859211	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60960627	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6132200-6138200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:6132200-6139200	Weak transcription	Gastric	stomach
3	chr10:6132400-6139000	Weak transcription	Esophagus	oesophagus
4	chr10:6132400-6139200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:6132400-6139200	Weak transcription	Aorta	Aorta
6	chr10:6132400-6139600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:6132600-6138600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:6132600-6139000	Weak transcription	Colonic Mucosa	Colon
9	chr10:6132600-6139200	Weak transcription	Pancreas	Pancrea
10	chr10:6132800-6138800	Weak transcription	Placenta	Placenta
11	chr10:6132800-6139200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:6132800-6139400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:6132800-6139600	Weak transcription	NH-A	brain
14	chr10:6132800-6143200	Weak transcription	HSMMtube	muscle
15	chr10:6132800-6145600	Weak transcription	Fetal Kidney	kidney
16	chr10:6132800-6150400	Weak transcription	Stomach Mucosa	stomach
17	chr10:6132800-6152000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:6133400-6139000	Weak transcription	Fetal Intestine Large	intestine
19	chr10:6133400-6139200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:6133600-6138200	Enhancers	Adipose Nuclei	Adipose
21	chr10:6133800-6139000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:6133800-6139000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:6133800-6139000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:6133800-6139400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:6133800-6139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:6133800-6149000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:6134000-6138200	Weak transcription	Thymus	Thymus
28	chr10:6134000-6138800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:6134000-6139000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:6134000-6139000	Weak transcription	Fetal Lung	lung
31	chr10:6134000-6139200	Weak transcription	NHEK	skin
32	chr10:6134000-6139600	Weak transcription	HMEC	breast
33	chr10:6134000-6142400	Weak transcription	Hela-S3	cervix
34	chr10:6134000-6149800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:6134200-6139000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:6134200-6139000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:6134200-6139200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:6134400-6138200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:6134600-6138200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:6134600-6138600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:6134600-6139000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:6134800-6138200	Weak transcription	HepG2	liver
43	chr10:6134800-6142200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:6135000-6138200	Weak transcription	Dnd41	blood
45	chr10:6135000-6138800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:6135000-6139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:6135200-6138800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:6135200-6139200	Weak transcription	HUVEC	blood vessel
49	chr10:6135800-6138200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr10:6135800-6139000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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