Variant report

Variant	rs11256664
Chromosome Location	chr10:6132188-6132189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6130789..6132928-chr10:6134999..6139816,5	MCF-7	breast:
2	chr10:6018551..6021640-chr10:6130714..6134315,5	MCF-7	breast:
3	chr10:6130983..6133585-chr10:6620139..6622430,2	K562	blood:
4	chr10:6129825..6133257-chr10:6241985..6247329,10	MCF-7	breast:
5	chr10:6130591..6133050-chr10:6185385..6187497,2	MCF-7	breast:
6	chr10:6018064..6021783-chr10:6129304..6132316,4	K562	blood:
7	chr10:6131418..6133941-chr10:6140772..6145305,6	K562	blood:
8	chr10:6074070..6077031-chr10:6131328..6132999,2	K562	blood:
9	chr10:6131173..6133943-chr10:6186718..6189110,2	MCF-7	breast:
10	chr10:6130589..6132639-chr10:6184439..6189476,5	K562	blood:
11	chr10:6130957..6132763-chr10:6153390..6155892,2	MCF-7	breast:
12	chr10:6131719..6134216-chr10:6253022..6254903,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000237943	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000213994	Chromatin interaction
ENSG00000065675	Chromatin interaction
ENSG00000134453	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10905861	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11256626	0.88[ASN][1000 genomes]
rs11256685	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256761	1.00[ASN][1000 genomes]
rs11256763	0.92[ASN][1000 genomes]
rs11256801	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11256810	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11256854	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11256893	1.00[EUR][1000 genomes]
rs11256895	0.84[ASN][1000 genomes]
rs12252274	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12254328	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12262454	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263912	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264240	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412910	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12416306	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750669	0.89[ASN][1000 genomes]
rs58138632	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59330649	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60859211	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60960627	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv894815	chr10:6108439-6161781	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1040397	chr10:6129759-6158697	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3410151	chr10:6129771-6132319	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6130400-6132200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr10:6130400-6132200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:6130400-6132200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:6130400-6132200	Active TSS	Aorta	Aorta
5	chr10:6130400-6132200	Active TSS	GM12878-XiMat	blood
6	chr10:6130400-6132400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr10:6130400-6132400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:6130400-6132400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr10:6130400-6132600	Active TSS	H9 Cell Line	embryonic stem cell
10	chr10:6130400-6132600	Active TSS	Right Atrium	heart
11	chr10:6130400-6132800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:6130600-6132200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:6130600-6132200	Active TSS	Fetal Kidney	kidney
14	chr10:6130600-6132200	Active TSS	Gastric	stomach
15	chr10:6130600-6132400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr10:6130600-6132600	Active TSS	A549	lung
17	chr10:6130600-6132800	Active TSS	Rectal Smooth Muscle	rectum
18	chr10:6130800-6132200	Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr10:6130800-6132400	Active TSS	Left Ventricle	heart
20	chr10:6130800-6132400	Active TSS	HSMM	muscle
21	chr10:6131000-6132200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:6131000-6132200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:6131000-6132200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:6131000-6132200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:6131000-6132200	Active TSS	Right Ventricle	heart
26	chr10:6131000-6132200	Active TSS	Small Intestine	intestine
27	chr10:6131000-6132400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr10:6131000-6132400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:6131000-6132400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:6131000-6132400	Active TSS	Esophagus	oesophagus
31	chr10:6131000-6132600	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr10:6131000-6132800	Active TSS	Lung	lung
33	chr10:6131200-6132200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:6131200-6132200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:6131200-6132400	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr10:6131200-6132400	Active TSS	Stomach Mucosa	stomach
37	chr10:6131400-6132200	Active TSS	Fetal Heart	heart
38	chr10:6131400-6132400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr10:6131400-6132400	Bivalent/Poised TSS	HepG2	liver
40	chr10:6131400-6132600	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr10:6131400-6132800	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr10:6131400-6132800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:6131400-6132800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:6131600-6132200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr10:6131600-6132200	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr10:6131600-6132200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
47	chr10:6131600-6132200	Flanking Active TSS	Spleen	Spleen
48	chr10:6131600-6132400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:6131600-6132400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr10:6131600-6132400	Flanking Active TSS	Fetal Muscle Trunk	muscle

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