Variant report

Variant	rs58142727
Chromosome Location	chr6:121833670-121833671
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17083712	0.81[AMR][1000 genomes]
rs17083744	0.81[AMR][1000 genomes]
rs28455731	0.81[AMR][1000 genomes]
rs34995334	0.81[AMR][1000 genomes]
rs9482172	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9490310	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9490312	0.81[AMR][1000 genomes]
rs9490314	0.81[AMR][1000 genomes]
rs9490315	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2156401	chr6:121833670-121833671	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121828600-121841200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:121829200-121836600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:121830600-121836600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:121830600-121843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:121832000-121836600	Weak transcription	NH-A	brain
6	chr6:121832000-121841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:121832000-121842000	Weak transcription	HMEC	breast
8	chr6:121832200-121836400	Weak transcription	Osteobl	bone
9	chr6:121832200-121836800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:121832200-121840600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:121832400-121835200	Weak transcription	HUVEC	blood vessel
12	chr6:121832800-121836800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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