Variant report

Variant	rs9490310
Chromosome Location	chr6:121827964-121827965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10499112	0.84[EUR][1000 genomes]
rs17083712	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17083744	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17654108	1.00[CEU][hapmap];0.84[TSI][hapmap]
rs28455731	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28581202	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34995334	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58142727	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6937080	0.84[EUR][1000 genomes]
rs7743275	0.82[EUR][1000 genomes]
rs7757975	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320821	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9482169	0.80[EUR][1000 genomes]
rs9482172	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9490298	0.84[EUR][1000 genomes]
rs9490301	0.80[EUR][1000 genomes]
rs9490302	0.84[EUR][1000 genomes]
rs9490305	0.84[EUR][1000 genomes]
rs9490306	0.84[EUR][1000 genomes]
rs9490308	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9490312	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9490314	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9490315	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:121820000-121828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:121824200-121829400	Enhancers	Hela-S3	cervix
4	chr6:121826000-121828000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:121826000-121828000	Weak transcription	NH-A	brain
6	chr6:121826000-121830000	Weak transcription	HUVEC	blood vessel
7	chr6:121826600-121828600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:121826800-121828000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:121826800-121831400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:121827400-121828400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:121827600-121828200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:121827600-121828600	Enhancers	A549	lung
13	chr6:121827600-121830600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:121827800-121828200	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:121827800-121828400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:121827800-121828600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:121827800-121828600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:121827800-121828600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:121827800-121828600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:121827800-121828600	Enhancers	HMEC	breast
21	chr6:121827800-121828800	Enhancers	Colon Smooth Muscle	Colon
22	chr6:121827800-121829200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:121827800-121829400	Enhancers	Fetal Intestine Large	intestine
24	chr6:121827800-121829400	Enhancers	Osteobl	bone
25	chr6:121827800-121830000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links