Variant report

Variant	rs7743275
Chromosome Location	chr6:121809074-121809075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10499112	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198325	0.87[ASN][1000 genomes]
rs13212802	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17654108	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28446047	0.86[EUR][1000 genomes]
rs28581202	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35674549	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6937080	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571116	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9482169	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482172	0.80[EUR][1000 genomes]
rs9490298	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490301	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490302	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490305	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490306	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9490308	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9490310	0.82[EUR][1000 genomes]
rs9490312	0.80[EUR][1000 genomes]
rs9490314	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3473262	chr6:121808803-121809266	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3473259	chr6:121808859-121809238	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3473260	chr6:121808866-121809253	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3473261	chr6:121808878-121809205	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3473264	chr6:121808933-121809165	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3441903	chr6:121809035-121809186	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121806600-121809600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:121807000-121809600	Weak transcription	NHEK	skin
3	chr6:121807000-121812600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:121807200-121809200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:121807400-121812600	Weak transcription	Hela-S3	cervix
6	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:121808200-121810000	Enhancers	A549	lung
8	chr6:121808400-121810000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:121808400-121810000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:121808400-121810400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:121808400-121810400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:121808600-121809200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:121808600-121809800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:121808600-121809800	Enhancers	HMEC	breast
15	chr6:121808600-121810400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:121808800-121809200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:121808800-121809200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:121808800-121809800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:121809000-121809400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:121809000-121809400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:121809000-121809400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:121809000-121810400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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