Variant report

Variant	rs9490298
Chromosome Location	chr6:121812424-121812425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10499112	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198325	0.87[ASN][1000 genomes]
rs13212802	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083712	0.81[EUR][1000 genomes]
rs17654108	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28446047	0.83[EUR][1000 genomes]
rs28455731	0.81[EUR][1000 genomes]
rs28581202	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34995334	0.81[EUR][1000 genomes]
rs35674549	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6937080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571116	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743275	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482169	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482172	0.82[EUR][1000 genomes]
rs9490301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490306	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9490308	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9490310	0.84[EUR][1000 genomes]
rs9490312	0.82[EUR][1000 genomes]
rs9490314	0.82[EUR][1000 genomes]
rs9490315	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807000-121812600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:121807400-121812600	Weak transcription	Hela-S3	cervix
3	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:121810000-121812600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:121810000-121812600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:121810000-121813000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:121810600-121812600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:121811000-121812600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:121811800-121812800	Enhancers	A549	lung
10	chr6:121811800-121813200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:121811800-121813200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:121811800-121813400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:121811800-121814000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:121812000-121813000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:121812400-121812600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:121812400-121813200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:121812400-121813200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:121812400-121813200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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