Variant report

Variant	rs58149635
Chromosome Location	chr2:67804466-67804467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12327999	1.00[AMR][1000 genomes]
rs57073040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57725474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59374870	1.00[AMR][1000 genomes]
rs60750213	1.00[AMR][1000 genomes]
rs60968435	1.00[AMR][1000 genomes]
rs6747700	1.00[AMR][1000 genomes]
rs7594853	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67801200-67806400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:67801800-67805000	Weak transcription	A549	lung
3	chr2:67801800-67806000	Weak transcription	NHLF	lung
4	chr2:67803800-67806000	Weak transcription	Fetal Stomach	stomach
5	chr2:67804200-67805400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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