Variant report

Variant	rs60968435
Chromosome Location	chr2:67893057-67893058
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57073040	1.00[AMR][1000 genomes]
rs57725474	1.00[AMR][1000 genomes]
rs58149635	1.00[AMR][1000 genomes]
rs59374870	1.00[AMR][1000 genomes]
rs60750213	1.00[AMR][1000 genomes]
rs6747700	1.00[AMR][1000 genomes]
rs7594853	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67888600-67893200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:67888800-67893400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:67891000-67893400	Weak transcription	Fetal Stomach	stomach
4	chr2:67891200-67893200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:67891400-67893400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:67891400-67893600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:67891400-67894600	Weak transcription	Aorta	Aorta
8	chr2:67891600-67893200	Weak transcription	Psoas Muscle	Psoas
9	chr2:67892200-67893400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:67892200-67893600	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links