Variant report

Variant	rs58153086
Chromosome Location	chr9:92964396-92964397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92936090..92938700-chr9:92964176..92966160,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10992761	0.82[AFR][1000 genomes]
rs10992762	0.82[AFR][1000 genomes]
rs11789542	0.82[AFR][1000 genomes]
rs12347139	0.82[AFR][1000 genomes]
rs12353226	0.82[AFR][1000 genomes]
rs16906332	0.85[AFR][1000 genomes]
rs16906334	0.85[AFR][1000 genomes]
rs16936969	0.85[AFR][1000 genomes]
rs28803562	0.85[AFR][1000 genomes]
rs57510024	1.00[AMR][1000 genomes]
rs58438788	0.82[AFR][1000 genomes]
rs58756254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59300585	0.85[AFR][1000 genomes]
rs7044660	1.00[AMR][1000 genomes]
rs7047535	0.85[AFR][1000 genomes]
rs72741312	0.85[AFR][1000 genomes]
rs72758906	0.82[AFR][1000 genomes]
rs72758908	0.82[AFR][1000 genomes]
rs72758910	0.82[AFR][1000 genomes]
rs7865093	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv482531	chr9:92907692-93096360	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2761542	chr9:92945565-92966675	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv969776	chr9:92946057-92998706	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92963600-92964400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:92963800-92965800	Weak transcription	Primary B cells from cord blood	blood
3	chr9:92964000-92964400	Enhancers	Duodenum Mucosa	Duodenum
4	chr9:92964000-92964400	Enhancers	HepG2	liver
5	chr9:92964200-92966800	Weak transcription	Fetal Intestine Large	intestine

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