Variant report

Variant	rs58756254
Chromosome Location	chr9:93008746-93008747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93005901..93009302-chr9:93010303..93013281,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10992761	0.82[AFR][1000 genomes]
rs10992762	0.82[AFR][1000 genomes]
rs11789542	0.82[AFR][1000 genomes]
rs12347139	0.82[AFR][1000 genomes]
rs12353226	0.82[AFR][1000 genomes]
rs16906332	0.85[AFR][1000 genomes]
rs16906334	0.85[AFR][1000 genomes]
rs16936969	0.85[AFR][1000 genomes]
rs28803562	0.85[AFR][1000 genomes]
rs57510024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58153086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58438788	0.82[AFR][1000 genomes]
rs59300585	0.85[AFR][1000 genomes]
rs61646409	1.00[EUR][1000 genomes]
rs7044660	1.00[AMR][1000 genomes]
rs7047535	0.85[AFR][1000 genomes]
rs72741312	0.85[AFR][1000 genomes]
rs72758906	0.82[AFR][1000 genomes]
rs72758908	0.82[AFR][1000 genomes]
rs72758910	0.82[AFR][1000 genomes]
rs7865093	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv482531	chr9:92907692-93096360	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93008000-93008800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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