Variant report

Variant	rs58155522
Chromosome Location	chr7:33542958-33542959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr7:33542758-33543048	T-47D	breast:	n/a	n/a
2	FAM48A	chr7:33542887-33542994	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
BBS9	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12666901	1.00[AMR][1000 genomes]
rs12669656	1.00[AMR][1000 genomes]
rs12671882	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33533800-33543800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:33534200-33552400	Weak transcription	Pancreas	Pancrea
3	chr7:33535400-33547200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:33536400-33543600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:33536800-33546000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:33537000-33552200	Weak transcription	Aorta	Aorta
7	chr7:33540000-33544400	Enhancers	Fetal Muscle Leg	muscle
8	chr7:33540400-33543200	Enhancers	Brain Substantia Nigra	brain
9	chr7:33540600-33543200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:33540800-33543600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:33540800-33568600	Weak transcription	Left Ventricle	heart
12	chr7:33541200-33543400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:33541200-33543800	Weak transcription	Fetal Stomach	stomach
14	chr7:33541200-33554600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:33541400-33543200	Weak transcription	Fetal Lung	lung
16	chr7:33541400-33567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:33541600-33543400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:33541600-33543800	Weak transcription	Psoas Muscle	Psoas
19	chr7:33541800-33543600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:33541800-33544000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr7:33542000-33543200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:33542200-33543000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:33542200-33543000	Enhancers	Esophagus	oesophagus
24	chr7:33542200-33543200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:33542200-33543200	Enhancers	NHEK	skin
26	chr7:33542200-33543400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:33542400-33543600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:33542400-33547800	Weak transcription	HSMM	muscle
29	chr7:33542400-33574200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:33542800-33543000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:33542800-33543000	Enhancers	Gastric	stomach
32	chr7:33542800-33543400	Enhancers	HepG2	liver

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