Variant report

Variant	rs12671882
Chromosome Location	chr7:33515098-33515099
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10245418	0.89[EUR][1000 genomes]
rs10252552	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10259674	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10267370	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10276929	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12666595	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12666825	0.83[ASN][1000 genomes]
rs12666901	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12666955	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12666965	0.83[ASN][1000 genomes]
rs12667607	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12668060	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12669172	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12669656	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12669847	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12669848	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12670789	0.94[EUR][1000 genomes]
rs12672071	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12672496	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12673004	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3779240	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57415509	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58155522	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58749439	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60809075	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60878395	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6969260	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6974593	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520794	chr7:33506906-33517523	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33475400-33516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:33510800-33533200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:33515000-33515400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:33515000-33516000	Weak transcription	Right Ventricle	heart

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