Variant report

Variant	rs58749439
Chromosome Location	chr7:33398585-33398586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10245418	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10252552	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10259674	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10267370	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276929	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12666595	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12666825	0.96[ASN][1000 genomes]
rs12666901	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12666955	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12666965	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12667607	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12668060	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12669011	0.82[AMR][1000 genomes]
rs12669172	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12669656	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12669847	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12669848	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12670789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12671882	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12672071	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12672496	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12673004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17170181	0.91[AMR][1000 genomes]
rs17170182	0.91[AMR][1000 genomes]
rs3779240	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57415509	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58949565	0.82[AMR][1000 genomes]
rs60809075	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60878395	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6969260	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6974593	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33375800-33399200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:33377600-33404800	Weak transcription	Left Ventricle	heart
6	chr7:33378200-33404400	Weak transcription	Aorta	Aorta
7	chr7:33380000-33404400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:33380600-33404800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:33381400-33407200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:33384000-33425400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:33385800-33407000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:33386000-33407400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:33386400-33408200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:33387000-33425200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:33388800-33404800	Weak transcription	Lung	lung
16	chr7:33389000-33437400	Weak transcription	Liver	Liver
17	chr7:33391600-33407400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:33392600-33423000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr7:33393600-33419600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:33394200-33419400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:33394200-33419600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:33394400-33427800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:33395000-33407400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:33395400-33405000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:33396600-33420000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:33396600-33422000	Weak transcription	Small Intestine	intestine

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