Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10245418	0.82[AMR][1000 genomes]
rs10252552	0.82[AMR][1000 genomes]
rs10259674	0.82[AMR][1000 genomes]
rs10267370	0.82[AMR][1000 genomes]
rs10276929	0.82[AMR][1000 genomes]
rs11981105	0.81[EUR][1000 genomes]
rs12666595	1.00[AFR][1000 genomes]
rs12667607	1.00[AFR][1000 genomes]
rs12670016	1.00[AFR][1000 genomes]
rs12670789	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12672496	0.82[AMR][1000 genomes]
rs12672991	0.81[EUR][1000 genomes]
rs12673004	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1420152	0.81[ASN][1000 genomes]
rs17170181	0.91[AMR][1000 genomes]
rs17170182	0.91[AMR][1000 genomes]
rs4720110	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4720111	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4723264	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56802431	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57415509	1.00[AFR][1000 genomes]
rs58749439	0.82[AMR][1000 genomes]
rs58949565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59602640	1.00[EUR][1000 genomes]
rs59801768	0.90[EUR][1000 genomes]
rs60809075	1.00[AFR][1000 genomes]
rs60878395	1.00[AFR][1000 genomes]
rs61019179	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6969260	0.82[AMR][1000 genomes]
rs6974593	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33283400-33290800	Weak transcription	Fetal Kidney	kidney
2	chr7:33283800-33316000	Weak transcription	Ovary	ovary
3	chr7:33284200-33288400	Weak transcription	Fetal Lung	lung
4	chr7:33285200-33288200	Weak transcription	HepG2	liver
5	chr7:33286800-33291600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:33287000-33287200	Enhancers	Fetal Muscle Leg	muscle
7	chr7:33287000-33287200	ZNF genes & repeats	Pancreas	Pancrea
8	chr7:33287000-33287400	Weak transcription	Rectal Smooth Muscle	rectum

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