Variant report

Variant	rs56802431
Chromosome Location	chr7:33233796-33233797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33228932..33230508-chr7:33232086..33233965,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10254116	0.80[ASN][1000 genomes]
rs11981105	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12669011	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12672991	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4720110	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4720111	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4723264	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58949565	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59602640	1.00[EUR][1000 genomes]
rs59801768	0.90[EUR][1000 genomes]
rs61019179	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33206600-33234800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:33217000-33239200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:33217800-33252400	Weak transcription	Aorta	Aorta
4	chr7:33218200-33235000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:33218200-33252200	Weak transcription	Left Ventricle	heart
6	chr7:33220600-33237000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:33221000-33236200	Weak transcription	Brain Anterior Caudate	brain
8	chr7:33221000-33236400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:33226400-33234400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:33230200-33234600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:33230800-33234600	Weak transcription	NHDF-Ad	bronchial
12	chr7:33230800-33237000	Weak transcription	Primary T cells from cord blood	blood
13	chr7:33230800-33248000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:33231200-33234000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:33231200-33238200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:33231400-33235200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr7:33233200-33236800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:33233400-33234600	Weak transcription	Psoas Muscle	Psoas
19	chr7:33233400-33236400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:33233400-33236600	Enhancers	Osteobl	bone

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