Variant report

Variant	rs11981105
Chromosome Location	chr7:33214789-33214790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33147934..33150026-chr7:33214011..33215692,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164610	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12669011	0.81[EUR][1000 genomes]
rs12672991	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4720110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4720111	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4723253	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4723264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56802431	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58949565	0.81[EUR][1000 genomes]
rs59602640	0.81[EUR][1000 genomes]
rs59801768	0.90[EUR][1000 genomes]
rs61019179	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv933792	chr7:33169693-33216984	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33184800-33217200	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:33185400-33218000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:33185600-33224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:33190000-33217600	Weak transcription	Left Ventricle	heart
5	chr7:33190200-33230400	Weak transcription	Gastric	stomach
6	chr7:33195200-33220200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:33196800-33217200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:33197000-33222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:33197200-33220400	Weak transcription	Brain Anterior Caudate	brain
10	chr7:33198400-33217600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:33200200-33217600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:33202400-33219800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:33203800-33221200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:33204400-33217600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:33206200-33225400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:33206400-33217600	Weak transcription	Thymus	Thymus
17	chr7:33206400-33220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:33206400-33221200	Weak transcription	Colonic Mucosa	Colon
19	chr7:33206400-33230400	Weak transcription	Right Ventricle	heart
20	chr7:33206600-33215000	Weak transcription	Aorta	Aorta
21	chr7:33206600-33217200	Weak transcription	Adipose Nuclei	Adipose
22	chr7:33206600-33217400	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:33206600-33217600	Weak transcription	Esophagus	oesophagus
24	chr7:33206600-33217600	Weak transcription	Ovary	ovary
25	chr7:33206600-33217600	Weak transcription	Spleen	Spleen
26	chr7:33206600-33217800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:33206600-33222600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr7:33206600-33230400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:33206600-33232600	Weak transcription	Pancreas	Pancrea
30	chr7:33206600-33234800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:33206800-33222400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:33206800-33230400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:33210800-33230200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:33211800-33217600	Weak transcription	Right Atrium	heart
35	chr7:33212800-33217000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:33213400-33230600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:33213600-33218800	Weak transcription	Primary T cells from cord blood	blood
38	chr7:33213800-33218800	Weak transcription	Fetal Intestine Large	intestine
39	chr7:33214000-33217000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr7:33214000-33217600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr7:33214000-33230400	Weak transcription	Liver	Liver
42	chr7:33214200-33217200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:33214200-33217600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:33214200-33220200	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:33214200-33223600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:33214200-33226000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr7:33214400-33217400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:33214400-33217600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr7:33214400-33220200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr7:33214400-33220400	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links