Variant report

Variant	rs17170182
Chromosome Location	chr7:33352368-33352369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10245418	0.91[AMR][1000 genomes]
rs10252552	0.91[AMR][1000 genomes]
rs10259674	0.91[AMR][1000 genomes]
rs10267370	0.91[AMR][1000 genomes]
rs10276929	0.91[AMR][1000 genomes]
rs12669011	0.91[AMR][1000 genomes]
rs12670789	0.91[AMR][1000 genomes]
rs12672496	0.91[AMR][1000 genomes]
rs12673004	0.91[AMR][1000 genomes]
rs17170181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58749439	0.91[AMR][1000 genomes]
rs58949565	0.91[AMR][1000 genomes]
rs6969260	0.91[AMR][1000 genomes]
rs6974593	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3398087	chr7:33339761-33355341	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33328000-33354600	Weak transcription	Ovary	ovary
2	chr7:33334200-33357200	Weak transcription	Gastric	stomach
3	chr7:33340000-33354400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr7:33340000-33358600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:33343200-33361600	Weak transcription	Brain Angular Gyrus	brain
6	chr7:33344200-33355200	Weak transcription	Lung	lung
7	chr7:33344200-33359000	Weak transcription	Spleen	Spleen
8	chr7:33347400-33354600	Weak transcription	Aorta	Aorta
9	chr7:33350400-33356000	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:33350600-33353000	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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