Variant report

Variant	rs12669847
Chromosome Location	chr7:33436006-33436007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10230991	0.81[AFR][1000 genomes]
rs10235943	0.81[AFR][1000 genomes]
rs10236358	0.81[AFR][1000 genomes]
rs10243590	0.81[AFR][1000 genomes]
rs10245418	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10250312	0.81[AFR][1000 genomes]
rs10252552	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10252935	0.81[AFR][1000 genomes]
rs10253352	0.90[AFR][1000 genomes]
rs10257379	0.81[AFR][1000 genomes]
rs10259513	0.81[AFR][1000 genomes]
rs10259674	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10266641	0.81[AFR][1000 genomes]
rs10267370	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10270137	0.81[AFR][1000 genomes]
rs10272446	0.81[AFR][1000 genomes]
rs10276929	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12333380	0.81[AFR][1000 genomes]
rs12334131	0.81[AFR][1000 genomes]
rs12666595	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12666825	0.98[ASN][1000 genomes]
rs12666901	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12666955	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12666965	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12667607	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12668060	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669172	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12669656	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12669848	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670789	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12671882	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12672071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12672496	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12673004	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28465518	0.81[AFR][1000 genomes]
rs28478218	0.81[AFR][1000 genomes]
rs28564487	0.81[AFR][1000 genomes]
rs28622379	0.81[AFR][1000 genomes]
rs28673971	0.81[AFR][1000 genomes]
rs3779240	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4298411	0.81[AFR][1000 genomes]
rs57415509	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58749439	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60809075	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60878395	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6969260	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6974593	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33389000-33437400	Weak transcription	Liver	Liver
2	chr7:33403400-33437800	Weak transcription	Brain Substantia Nigra	brain
3	chr7:33418000-33438600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:33418200-33436400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:33419000-33436800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:33420400-33436400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:33420400-33444600	Weak transcription	Left Ventricle	heart
8	chr7:33420600-33437800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:33420600-33449200	Weak transcription	Ovary	ovary
10	chr7:33420800-33437400	Weak transcription	Fetal Intestine Large	intestine
11	chr7:33420800-33437800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:33421000-33439800	Weak transcription	Fetal Stomach	stomach
13	chr7:33421000-33442600	Weak transcription	Pancreas	Pancrea
14	chr7:33422200-33452200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:33422600-33437800	Weak transcription	Brain Angular Gyrus	brain
16	chr7:33428200-33436200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:33428200-33438200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:33428200-33458000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:33435400-33436400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:33435400-33441800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:33435600-33436200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:33435600-33436400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:33435600-33436800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr7:33435600-33437200	Weak transcription	Fetal Lung	lung
25	chr7:33435600-33439200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:33435800-33439400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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