Variant report

Variant	rs10252935
Chromosome Location	chr7:33462817-33462818
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10230991	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10235943	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10236358	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10239609	1.00[YRI][hapmap]
rs10243590	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10245418	1.00[YRI][hapmap]
rs10250312	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10252552	1.00[YRI][hapmap]
rs10253189	0.83[AFR][1000 genomes]
rs10253352	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10253574	1.00[YRI][hapmap]
rs10257379	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10259513	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10259674	1.00[YRI][hapmap]
rs10266641	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10267370	1.00[YRI][hapmap]
rs10270137	0.81[AFR][1000 genomes]
rs10272446	0.81[AFR][1000 genomes]
rs10276929	1.00[YRI][hapmap]
rs10951385	1.00[YRI][hapmap]
rs12333380	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12334131	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12669847	0.81[AFR][1000 genomes]
rs12672071	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12672496	1.00[YRI][hapmap]
rs28465518	0.81[AFR][1000 genomes]
rs28478218	0.81[AFR][1000 genomes]
rs28564487	0.81[AFR][1000 genomes]
rs28622379	0.81[AFR][1000 genomes]
rs28673971	1.00[AFR][1000 genomes]
rs3779240	1.00[YRI][hapmap]
rs4298411	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6969260	1.00[YRI][hapmap]
rs6974593	1.00[YRI][hapmap]
rs9785054	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33454800-33476800	Weak transcription	Aorta	Aorta
2	chr7:33458200-33466400	Weak transcription	Esophagus	oesophagus
3	chr7:33458400-33465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:33458400-33465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:33460600-33463000	Enhancers	Fetal Lung	lung
6	chr7:33461200-33463200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:33461400-33465000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:33461400-33465000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:33462200-33463200	Enhancers	Adipose Nuclei	Adipose
10	chr7:33462400-33463000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:33462400-33463000	Enhancers	Fetal Muscle Leg	muscle
12	chr7:33462400-33463000	Enhancers	Right Ventricle	heart
13	chr7:33462400-33463200	Enhancers	Liver	Liver
14	chr7:33462400-33463200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr7:33462400-33464200	Enhancers	Primary B cells from peripheral blood	blood
16	chr7:33462600-33463000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:33462600-33463000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:33462600-33463000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:33462600-33463000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:33462600-33463000	Enhancers	Gastric	stomach
21	chr7:33462600-33463000	Enhancers	Psoas Muscle	Psoas
22	chr7:33462600-33463000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr7:33462600-33463200	Enhancers	GM12878-XiMat	blood
24	chr7:33462600-33465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:33462800-33463000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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