Variant report

Variant	rs10259513
Chromosome Location	chr7:33499515-33499516
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10230991	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10235943	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10236358	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10239609	1.00[YRI][hapmap]
rs10243590	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10245418	1.00[YRI][hapmap]
rs10250312	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10252552	1.00[YRI][hapmap]
rs10252935	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10253189	0.83[AFR][1000 genomes]
rs10253352	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10253574	1.00[YRI][hapmap]
rs10257379	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10259674	1.00[YRI][hapmap]
rs10266641	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10267370	1.00[YRI][hapmap]
rs10270137	0.81[AFR][1000 genomes]
rs10272446	0.81[AFR][1000 genomes]
rs10276929	1.00[YRI][hapmap]
rs10280367	1.00[YRI][hapmap]
rs10951385	1.00[YRI][hapmap]
rs12333380	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12334131	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12669847	0.81[AFR][1000 genomes]
rs12672071	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12672496	1.00[YRI][hapmap]
rs28465518	0.81[AFR][1000 genomes]
rs28478218	0.81[AFR][1000 genomes]
rs28564487	0.81[AFR][1000 genomes]
rs28622379	0.81[AFR][1000 genomes]
rs28673971	1.00[AFR][1000 genomes]
rs3779240	1.00[YRI][hapmap]
rs4298411	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6462470	1.00[YRI][hapmap]
rs6952538	1.00[YRI][hapmap]
rs6962002	1.00[YRI][hapmap]
rs6969260	1.00[YRI][hapmap]
rs6974593	1.00[YRI][hapmap]
rs7806498	1.00[YRI][hapmap]
rs9785054	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv934287	chr7:33470390-33512880	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33475400-33516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:33493000-33502800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:33498800-33499600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:33499000-33502800	Weak transcription	Brain Substantia Nigra	brain
5	chr7:33499200-33502400	Weak transcription	Fetal Lung	lung
6	chr7:33499400-33502200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:33499400-33502600	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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