Variant report

Variant	rs10253189
Chromosome Location	chr7:33463009-33463010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10230991	0.83[AFR][1000 genomes]
rs10235943	0.83[AFR][1000 genomes]
rs10250312	0.83[AFR][1000 genomes]
rs10252935	0.83[AFR][1000 genomes]
rs10259513	0.83[AFR][1000 genomes]
rs12333380	0.83[AFR][1000 genomes]
rs12334131	0.83[AFR][1000 genomes]
rs28673971	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33454800-33476800	Weak transcription	Aorta	Aorta
2	chr7:33458200-33466400	Weak transcription	Esophagus	oesophagus
3	chr7:33458400-33465000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:33458400-33465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:33461200-33463200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:33461400-33465000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:33461400-33465000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:33462200-33463200	Enhancers	Adipose Nuclei	Adipose
9	chr7:33462400-33463200	Enhancers	Liver	Liver
10	chr7:33462400-33463200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr7:33462400-33464200	Enhancers	Primary B cells from peripheral blood	blood
12	chr7:33462600-33463200	Enhancers	GM12878-XiMat	blood
13	chr7:33462600-33465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:33463000-33463400	Weak transcription	Fetal Lung	lung
15	chr7:33463000-33465000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:33463000-33465000	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:33463000-33465800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:33463000-33476800	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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