Variant report

Variant	rs10250312
Chromosome Location	chr7:33465966-33465967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10230991	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10235943	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10236358	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10239609	1.00[YRI][hapmap]
rs10243590	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10245418	1.00[YRI][hapmap]
rs10252552	1.00[YRI][hapmap]
rs10252935	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10253189	0.83[AFR][1000 genomes]
rs10253352	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10253574	1.00[YRI][hapmap]
rs10257379	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10259513	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10259674	1.00[YRI][hapmap]
rs10266641	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10267370	1.00[YRI][hapmap]
rs10270137	0.81[AFR][1000 genomes]
rs10272446	0.81[AFR][1000 genomes]
rs10276929	1.00[YRI][hapmap]
rs10951385	1.00[YRI][hapmap]
rs12333380	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12334131	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12669847	0.81[AFR][1000 genomes]
rs12672071	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12672496	1.00[YRI][hapmap]
rs28465518	0.81[AFR][1000 genomes]
rs28478218	0.81[AFR][1000 genomes]
rs28564487	0.81[AFR][1000 genomes]
rs28622379	0.81[AFR][1000 genomes]
rs28673971	1.00[AFR][1000 genomes]
rs3779240	1.00[YRI][hapmap]
rs4298411	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6969260	1.00[YRI][hapmap]
rs6974593	1.00[YRI][hapmap]
rs9785054	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33454800-33476800	Weak transcription	Aorta	Aorta
2	chr7:33458200-33466400	Weak transcription	Esophagus	oesophagus
3	chr7:33463000-33476800	Weak transcription	Psoas Muscle	Psoas
4	chr7:33463200-33466600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:33465000-33466000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr7:33465000-33466200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:33465000-33466200	Enhancers	Fetal Lung	lung
8	chr7:33465000-33466400	Enhancers	Stomach Smooth Muscle	stomach
9	chr7:33465200-33467600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:33465600-33472600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:33465800-33467000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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