Variant report

Variant	rs10239609
Chromosome Location	chr7:33333302-33333303
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10230991	1.00[YRI][hapmap]
rs10233819	0.87[AFR][1000 genomes]
rs10235943	1.00[YRI][hapmap]
rs10236358	1.00[YRI][hapmap]
rs10243590	1.00[YRI][hapmap]
rs10245418	1.00[YRI][hapmap]
rs10250312	1.00[YRI][hapmap]
rs10252552	1.00[YRI][hapmap]
rs10252927	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10252935	1.00[YRI][hapmap]
rs10253352	1.00[YRI][hapmap]
rs10253574	1.00[YRI][hapmap]
rs10257379	1.00[YRI][hapmap]
rs10259513	1.00[YRI][hapmap]
rs10259674	1.00[YRI][hapmap]
rs10266641	1.00[YRI][hapmap]
rs10267370	1.00[YRI][hapmap]
rs10269511	1.00[YRI][hapmap]
rs10275832	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10276929	1.00[YRI][hapmap]
rs10951385	1.00[YRI][hapmap]
rs12333380	1.00[YRI][hapmap]
rs12334131	1.00[YRI][hapmap]
rs12672071	1.00[YRI][hapmap]
rs12672496	1.00[YRI][hapmap]
rs3779240	1.00[YRI][hapmap]
rs4298411	1.00[YRI][hapmap]
rs6969260	1.00[YRI][hapmap]
rs6974593	1.00[YRI][hapmap]
rs9785054	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1792546	chr7:33304218-33346932	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33317000-33347600	Weak transcription	Pancreas	Pancrea
2	chr7:33318600-33339600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr7:33327800-33334000	Weak transcription	Gastric	stomach
4	chr7:33328000-33339600	Weak transcription	Left Ventricle	heart
5	chr7:33328000-33354600	Weak transcription	Ovary	ovary
6	chr7:33328200-33339600	Weak transcription	Fetal Lung	lung
7	chr7:33329800-33339400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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