Variant report

Variant	rs10253352
Chromosome Location	chr7:33442002-33442003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10230991	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10235943	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10236358	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10239609	1.00[YRI][hapmap]
rs10243590	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10245418	1.00[YRI][hapmap]
rs10250312	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10252552	1.00[YRI][hapmap]
rs10252935	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10253574	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10257379	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10259513	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10259674	1.00[YRI][hapmap]
rs10266641	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10267370	0.91[GIH][hapmap];1.00[YRI][hapmap]
rs10270137	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10272446	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10276929	1.00[YRI][hapmap]
rs10951385	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs12112737	1.00[EUR][1000 genomes]
rs12333380	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12334131	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12669847	0.90[AFR][1000 genomes]
rs12672071	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12672496	0.85[GIH][hapmap];1.00[YRI][hapmap]
rs28465518	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28478218	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28564487	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28622379	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28673971	0.90[AFR][1000 genomes]
rs3779240	1.00[YRI][hapmap]
rs4298411	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6969260	1.00[YRI][hapmap]
rs6974593	1.00[YRI][hapmap]
rs9785054	0.90[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33420400-33444600	Weak transcription	Left Ventricle	heart
2	chr7:33420600-33449200	Weak transcription	Ovary	ovary
3	chr7:33421000-33442600	Weak transcription	Pancreas	Pancrea
4	chr7:33422200-33452200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:33428200-33458000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:33441200-33442200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:33441800-33442800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links