Variant report

Variant	rs10253574
Chromosome Location	chr7:33347070-33347071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10230991	1.00[YRI][hapmap]
rs10235943	1.00[YRI][hapmap]
rs10236358	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10239609	1.00[YRI][hapmap]
rs10243590	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10245418	1.00[YRI][hapmap]
rs10250312	1.00[YRI][hapmap]
rs10252552	1.00[YRI][hapmap]
rs10252927	1.00[YRI][hapmap]
rs10252935	1.00[YRI][hapmap]
rs10253352	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10257379	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10259513	1.00[YRI][hapmap]
rs10259674	1.00[YRI][hapmap]
rs10266641	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10267370	1.00[YRI][hapmap]
rs10269511	1.00[YRI][hapmap]
rs10270137	1.00[EUR][1000 genomes]
rs10272446	1.00[EUR][1000 genomes]
rs10275832	1.00[YRI][hapmap]
rs10276929	1.00[YRI][hapmap]
rs10951385	1.00[YRI][hapmap]
rs12112737	1.00[EUR][1000 genomes]
rs12333380	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12334131	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12672071	1.00[YRI][hapmap]
rs12672496	1.00[YRI][hapmap]
rs28465518	1.00[EUR][1000 genomes]
rs28478218	1.00[EUR][1000 genomes]
rs28564487	1.00[EUR][1000 genomes]
rs28622379	1.00[EUR][1000 genomes]
rs3779240	1.00[YRI][hapmap]
rs4298411	1.00[YRI][hapmap]
rs6969260	1.00[YRI][hapmap]
rs6974593	1.00[YRI][hapmap]
rs9785054	1.00[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3398087	chr7:33339761-33355341	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33317000-33347600	Weak transcription	Pancreas	Pancrea
2	chr7:33328000-33354600	Weak transcription	Ovary	ovary
3	chr7:33334200-33357200	Weak transcription	Gastric	stomach
4	chr7:33340000-33351200	Weak transcription	Left Ventricle	heart
5	chr7:33340000-33354400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:33340000-33358600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:33343200-33361600	Weak transcription	Brain Angular Gyrus	brain
8	chr7:33344200-33349800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:33344200-33355200	Weak transcription	Lung	lung
10	chr7:33344200-33359000	Weak transcription	Spleen	Spleen
11	chr7:33346200-33347800	Enhancers	Fetal Lung	lung

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