Variant report

Variant	rs6462470
Chromosome Location	chr7:33367004-33367005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10251272	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs10253342	0.90[CHB][hapmap];0.82[CHD][hapmap];0.83[ASN][1000 genomes]
rs10254276	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10258040	0.85[ASN][1000 genomes]
rs10259513	1.00[YRI][hapmap]
rs10268593	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs10280367	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12666246	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12666395	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12668181	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12668971	0.81[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12670765	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12673354	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs12674317	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1419926	0.81[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17395534	1.00[CEU][hapmap]
rs17395966	1.00[CEU][hapmap]
rs17475728	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs17476738	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs17725162	0.88[ASN][1000 genomes]
rs2159585	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs35173250	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3779241	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4341064	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4442031	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs57736066	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59066744	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60902947	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6462478	0.88[ASN][1000 genomes]
rs6952538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6960094	1.00[JPT][hapmap]
rs6962002	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970919	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6973093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6979138	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7777122	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7777332	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7806498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33358200-33368000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:33362200-33404400	Weak transcription	Ovary	ovary
4	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
5	chr7:33364000-33367200	Weak transcription	Fetal Intestine Small	intestine
6	chr7:33364400-33370400	Weak transcription	Fetal Stomach	stomach
7	chr7:33366600-33384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links