Variant report
| Variant | rs60902947 |
|---|---|
| Chromosome Location | chr7:33491079-33491080 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10258040 | 1.00[ASN][1000 genomes] |
| rs12666246 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12666395 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12668181 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12668971 | 0.97[ASN][1000 genomes] |
| rs12670765 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12674317 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1419920 | 0.92[ASN][1000 genomes] |
| rs1419926 | 0.97[ASN][1000 genomes] |
| rs17725162 | 0.97[ASN][1000 genomes] |
| rs2041418 | 0.92[ASN][1000 genomes] |
| rs2159585 | 0.89[ASN][1000 genomes] |
| rs35173250 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3779241 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4341064 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs57736066 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs59066744 | 1.00[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6462470 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6462478 | 0.97[ASN][1000 genomes] |
| rs6952538 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6960094 | 0.92[ASN][1000 genomes] |
| rs6962002 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6970919 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6973093 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6979138 | 0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7777122 | 0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7777332 | 0.97[ASN][1000 genomes] |
| rs7806498 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016416 | chr7:33241443-33559477 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv916660 | chr7:33272493-33506384 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv830944 | chr7:33389892-33549882 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv934287 | chr7:33470390-33512880 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv933237 | chr7:33470390-33574046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:33475400-33516000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr7:33486600-33492000 | Weak transcription | Osteobl | bone |
| 3 | chr7:33489000-33492800 | Weak transcription | Fetal Lung | lung |
