Variant report

Variant	rs6979138
Chromosome Location	chr7:33440913-33440914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10251272	0.81[CHB][hapmap]
rs10253342	0.81[CHB][hapmap]
rs10254276	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs10258040	0.91[ASN][1000 genomes]
rs10268593	0.81[CHB][hapmap]
rs10280367	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[EUR][1000 genomes]
rs12666246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12666395	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12668181	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12668971	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12670765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12673354	0.81[CHB][hapmap]
rs12674317	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419920	0.83[ASN][1000 genomes]
rs1419926	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17475728	0.81[CHB][hapmap]
rs17476738	0.81[CHB][hapmap]
rs17725162	0.94[ASN][1000 genomes]
rs2041418	0.83[ASN][1000 genomes]
rs2159585	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs35173250	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3779241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4341064	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4442031	1.00[CEU][hapmap]
rs57736066	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59066744	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60902947	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6462470	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6462478	0.94[ASN][1000 genomes]
rs6952538	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6960094	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6962002	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6970919	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973093	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7777122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777332	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7806498	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33420400-33444600	Weak transcription	Left Ventricle	heart
2	chr7:33420600-33449200	Weak transcription	Ovary	ovary
3	chr7:33421000-33442600	Weak transcription	Pancreas	Pancrea
4	chr7:33422200-33452200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:33428200-33458000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:33435400-33441800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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