Variant report

Variant	rs10254276
Chromosome Location	chr7:33297773-33297774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33283153..33284693-chr7:33295167..33297777,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10251272	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10253342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10268593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10280367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666246	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs12667345	0.99[ASN][1000 genomes]
rs12668181	0.85[EUR][1000 genomes]
rs12670765	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12673354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12674317	0.81[EUR][1000 genomes]
rs17395534	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs17395966	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs17475728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17476738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28560342	0.97[ASN][1000 genomes]
rs3779241	1.00[CEU][hapmap]
rs4341064	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4442031	1.00[CEU][hapmap]
rs57736066	0.83[EUR][1000 genomes]
rs58069881	0.89[ASN][1000 genomes]
rs59066744	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6462470	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6952538	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6962002	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6970919	0.83[EUR][1000 genomes]
rs6979138	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs73097268	0.89[ASN][1000 genomes]
rs73097281	0.99[ASN][1000 genomes]
rs7777122	1.00[CEU][hapmap]
rs7806498	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33283800-33316000	Weak transcription	Ovary	ovary
2	chr7:33288800-33317600	Weak transcription	Gastric	stomach
3	chr7:33289400-33309000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:33289600-33310800	Weak transcription	Psoas Muscle	Psoas
5	chr7:33290000-33316200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:33290800-33309000	Weak transcription	Fetal Stomach	stomach
7	chr7:33290800-33316400	Weak transcription	Aorta	Aorta
8	chr7:33291200-33297800	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:33291200-33298000	Weak transcription	NHDF-Ad	bronchial
10	chr7:33291200-33316000	Weak transcription	Primary T cells from cord blood	blood
11	chr7:33291600-33305200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:33291800-33307600	Weak transcription	Left Ventricle	heart
13	chr7:33293400-33302200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:33295400-33299800	Weak transcription	HepG2	liver
15	chr7:33295800-33298000	Weak transcription	Stomach Mucosa	stomach
16	chr7:33295800-33298400	Enhancers	Fetal Lung	lung
17	chr7:33297400-33310800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:33297600-33298600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:33297600-33298600	Enhancers	Osteobl	bone

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