Variant report

Variant	rs6952538
Chromosome Location	chr7:33357152-33357153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33354992..33357519-chr7:33360634..33362706,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10251272	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs10253342	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs10254276	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10258040	0.82[ASN][1000 genomes]
rs10259513	1.00[YRI][hapmap]
rs10268593	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs10280367	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12666246	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12666395	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12668181	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12668971	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12670765	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12673354	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs12674317	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419926	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17395534	1.00[CEU][hapmap]
rs17395966	1.00[CEU][hapmap]
rs17475728	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs17476738	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs17725162	0.85[ASN][1000 genomes]
rs2159585	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs35173250	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3779241	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4341064	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442031	1.00[CEU][hapmap]
rs57736066	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59066744	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60902947	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6462470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6462478	0.85[ASN][1000 genomes]
rs6960094	1.00[JPT][hapmap]
rs6962002	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6970919	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6973093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs6979138	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7777122	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7777332	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7806498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33334200-33357200	Weak transcription	Gastric	stomach
2	chr7:33340000-33358600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr7:33343200-33361600	Weak transcription	Brain Angular Gyrus	brain
4	chr7:33344200-33359000	Weak transcription	Spleen	Spleen
5	chr7:33353400-33357200	Weak transcription	Fetal Lung	lung
6	chr7:33353400-33357400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:33354400-33358000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:33355200-33357200	Weak transcription	Aorta	Aorta
9	chr7:33355200-33357200	Weak transcription	Ovary	ovary
10	chr7:33355200-33357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
12	chr7:33355400-33357600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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