Variant report

Variant	rs58173010
Chromosome Location	chr7:71463948-71463949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30851925..30854155-chr7:71462779..71465346,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204580	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1003685	0.85[ASN][1000 genomes]
rs1017047	0.97[ASN][1000 genomes]
rs10231062	0.89[ASN][1000 genomes]
rs10252249	0.88[ASN][1000 genomes]
rs10265141	0.89[ASN][1000 genomes]
rs10269748	0.82[ASN][1000 genomes]
rs10273495	0.89[ASN][1000 genomes]
rs10280279	0.89[ASN][1000 genomes]
rs10280568	0.81[ASN][1000 genomes]
rs1034806	0.84[ASN][1000 genomes]
rs1099451	0.82[ASN][1000 genomes]
rs1099452	0.82[ASN][1000 genomes]
rs12666489	0.87[ASN][1000 genomes]
rs12666891	0.89[ASN][1000 genomes]
rs12671441	0.89[ASN][1000 genomes]
rs17144232	0.89[ASN][1000 genomes]
rs17144240	0.95[ASN][1000 genomes]
rs2867564	0.84[ASN][1000 genomes]
rs2867565	0.84[ASN][1000 genomes]
rs28679767	0.82[ASN][1000 genomes]
rs35720869	0.84[ASN][1000 genomes]
rs56132470	0.81[ASN][1000 genomes]
rs57375990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58064021	0.89[ASN][1000 genomes]
rs58251256	0.99[ASN][1000 genomes]
rs6965309	0.84[ASN][1000 genomes]
rs6980132	0.85[ASN][1000 genomes]
rs72506800	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72506801	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs844691	0.84[ASN][1000 genomes]
rs844692	0.82[ASN][1000 genomes]
rs844693	0.82[ASN][1000 genomes]
rs844694	0.82[ASN][1000 genomes]
rs844695	0.83[ASN][1000 genomes]
rs844696	0.82[ASN][1000 genomes]
rs844698	0.81[ASN][1000 genomes]
rs844699	0.81[ASN][1000 genomes]
rs844701	0.97[ASN][1000 genomes]
rs844712	0.87[ASN][1000 genomes]
rs844736	0.82[ASN][1000 genomes]
rs844740	0.82[ASN][1000 genomes]
rs844797	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1017367	chr7:71339782-71476575	ZNF genes & repeats Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv888344	chr7:71406392-71488833	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv888345	chr7:71408360-71485245	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv831023	chr7:71443549-71588033	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71454400-71481600	Weak transcription	Thymus	Thymus
2	chr7:71461000-71466400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:71461200-71464600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:71462200-71482400	Weak transcription	Fetal Thymus	thymus
5	chr7:71463000-71465000	Enhancers	Primary T cells from cord blood	blood

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