Variant report

Variant	rs6965309
Chromosome Location	chr7:71490649-71490650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1003685	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1017047	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10229928	0.89[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs10231062	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10252249	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10265141	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10269748	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10273495	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10277807	0.85[GIH][hapmap]
rs10280279	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10280568	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10280768	0.86[YRI][hapmap]
rs1034806	0.84[CHB][hapmap];0.83[CHD][hapmap]
rs1099451	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs12666891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12671441	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17137604	0.84[CHB][hapmap]
rs17137608	0.84[CHB][hapmap]
rs17144164	0.84[CHB][hapmap]
rs17144232	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17144240	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17144279	0.94[JPT][hapmap];0.83[YRI][hapmap]
rs17144283	0.91[JPT][hapmap];0.89[YRI][hapmap]
rs2867564	0.84[CHB][hapmap];0.83[CHD][hapmap]
rs28679767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56132470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57375990	0.84[ASN][1000 genomes]
rs58064021	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58173010	0.84[ASN][1000 genomes]
rs58251256	0.84[ASN][1000 genomes]
rs59254802	0.84[ASN][1000 genomes]
rs59329653	0.95[EUR][1000 genomes]
rs59381375	0.86[ASN][1000 genomes]
rs6955049	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs6980132	0.84[CHB][hapmap]
rs72506800	0.82[ASN][1000 genomes]
rs72506801	0.82[ASN][1000 genomes]
rs73368174	0.82[ASN][1000 genomes]
rs844677	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844679	0.82[ASN][1000 genomes]
rs844684	0.90[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs844685	0.82[ASN][1000 genomes]
rs844686	0.82[ASN][1000 genomes]
rs844692	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs844693	0.84[CHB][hapmap]
rs844694	0.84[CHB][hapmap];0.81[CHD][hapmap]
rs844699	0.84[CHB][hapmap]
rs844701	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs844705	0.84[CHB][hapmap]
rs844712	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844785	0.82[ASN][1000 genomes]
rs844790	0.84[CHB][hapmap]
rs844791	0.89[CHB][hapmap]
rs844793	0.84[CHB][hapmap]
rs844795	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs844796	0.84[CHB][hapmap];0.82[CHD][hapmap]
rs844797	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv831023	chr7:71443549-71588033	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71482400-71491400	Strong transcription	Fetal Thymus	thymus
2	chr7:71483400-71492600	Weak transcription	Fetal Brain Male	brain
3	chr7:71484600-71498400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:71487000-71493600	Strong transcription	Thymus	Thymus
5	chr7:71487400-71493200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:71487800-71493200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:71489000-71495000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:71489200-71493200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:71489200-71493200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:71490400-71490800	Enhancers	Brain Angular Gyrus	brain
11	chr7:71490400-71490800	Enhancers	Brain Substantia Nigra	brain
12	chr7:71490400-71491000	Enhancers	Brain Hippocampus Middle	brain
13	chr7:71490600-71490800	Enhancers	Brain Anterior Caudate	brain

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