Variant report

Variant	rs58174942
Chromosome Location	chr22:29346670-29346671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29344969..29347183-chr22:29349320..29351089,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56662554	1.00[AMR][1000 genomes]
rs59677997	1.00[AMR][1000 genomes]
rs61162472	1.00[AMR][1000 genomes]
rs61262861	1.00[AMR][1000 genomes]
rs7286589	1.00[AMR][1000 genomes]
rs73388832	1.00[AMR][1000 genomes]
rs73388848	1.00[AMR][1000 genomes]
rs73388889	1.00[AMR][1000 genomes]
rs73390897	1.00[AMR][1000 genomes]
rs73393032	1.00[AMR][1000 genomes]
rs73393045	1.00[AMR][1000 genomes]
rs73395867	1.00[AMR][1000 genomes]
rs73397022	1.00[AMR][1000 genomes]
rs73397795	1.00[AMR][1000 genomes]
rs73397802	1.00[AMR][1000 genomes]
rs73399604	1.00[AMR][1000 genomes]
rs73399643	1.00[AMR][1000 genomes]
rs73403430	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29332600-29347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:29333800-29347800	Weak transcription	Gastric	stomach
3	chr22:29335800-29347800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr22:29336200-29347600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr22:29338600-29347600	Weak transcription	Left Ventricle	heart
6	chr22:29339600-29346800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr22:29339600-29347600	Weak transcription	Pancreas	Pancrea
8	chr22:29339800-29347600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr22:29339800-29352600	Weak transcription	Stomach Mucosa	stomach
10	chr22:29340000-29349200	Weak transcription	Aorta	Aorta
11	chr22:29343000-29347800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr22:29343800-29347600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr22:29344000-29347000	Enhancers	Fetal Intestine Small	intestine
14	chr22:29344200-29347000	Enhancers	Fetal Intestine Large	intestine
15	chr22:29344400-29347400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr22:29344600-29347400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr22:29345200-29347600	Weak transcription	Esophagus	oesophagus
18	chr22:29345200-29350800	Enhancers	Fetal Muscle Leg	muscle
19	chr22:29345400-29347000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr22:29345400-29347000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr22:29345400-29349800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr22:29345400-29350000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr22:29345400-29350000	Enhancers	Fetal Lung	lung
24	chr22:29345600-29346800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr22:29345600-29347000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr22:29345600-29347000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr22:29345600-29347600	Enhancers	Colon Smooth Muscle	Colon
28	chr22:29345600-29349600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr22:29345600-29350200	Enhancers	Fetal Kidney	kidney
30	chr22:29345800-29346800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr22:29345800-29347000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr22:29345800-29347800	Enhancers	Adipose Nuclei	Adipose
33	chr22:29345800-29349400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr22:29345800-29349800	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr22:29345800-29350000	Enhancers	Rectal Smooth Muscle	rectum
36	chr22:29345800-29350600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr22:29345800-29351200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr22:29346000-29346800	Enhancers	Lung	lung
39	chr22:29346000-29346800	Enhancers	Osteobl	bone
40	chr22:29346000-29347200	Genic enhancers	HepG2	liver
41	chr22:29346000-29348600	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr22:29346000-29350000	Enhancers	Liver	Liver
43	chr22:29346200-29346800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
44	chr22:29346200-29346800	Enhancers	Brain Hippocampus Middle	brain
45	chr22:29346200-29347000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr22:29346200-29347000	Enhancers	Right Atrium	heart
47	chr22:29346200-29347000	Enhancers	GM12878-XiMat	blood
48	chr22:29346200-29347600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr22:29346200-29347600	Enhancers	Brain Germinal Matrix	brain
50	chr22:29346200-29348400	Enhancers	Brain Anterior Caudate	brain

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