Variant report

Variant	rs61262861
Chromosome Location	chr22:29251490-29251491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56662554	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58174942	1.00[AMR][1000 genomes]
rs59677997	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61162472	1.00[AMR][1000 genomes]
rs7286589	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388822	0.89[AFR][1000 genomes]
rs73388832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388889	1.00[AMR][1000 genomes]
rs73395867	1.00[AMR][1000 genomes]
rs73397795	1.00[AMR][1000 genomes]
rs73397802	1.00[AMR][1000 genomes]
rs73399604	1.00[AMR][1000 genomes]
rs73399643	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403430	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064079	chr22:29065528-29456059	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv834169	chr22:29095446-29303929	Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29234000-29251600	Weak transcription	Fetal Lung	lung
2	chr22:29244800-29251800	Weak transcription	Fetal Stomach	stomach
3	chr22:29246000-29252000	Weak transcription	Ovary	ovary
4	chr22:29246200-29251600	Weak transcription	Liver	Liver
5	chr22:29246400-29251800	Weak transcription	Pancreas	Pancrea
6	chr22:29251200-29252400	Enhancers	Duodenum Mucosa	Duodenum
7	chr22:29251200-29252400	Enhancers	Fetal Intestine Large	intestine
8	chr22:29251400-29251800	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr22:29251400-29252000	Enhancers	Stomach Mucosa	stomach
10	chr22:29251400-29252200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:29251400-29252200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr22:29251400-29252200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr22:29251400-29252400	Enhancers	Fetal Intestine Small	intestine
14	chr22:29251400-29253600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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