Variant report

Variant	rs58176634
Chromosome Location	chr15:93210987-93210988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1530026	0.86[ASN][1000 genomes]
rs16947147	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16947163	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57086675	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58676532	0.91[ASN][1000 genomes]
rs58969800	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61243196	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61315665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7171211	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172179	0.83[EUR][1000 genomes]
rs7174458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7176540	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73460426	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73460492	0.91[ASN][1000 genomes]
rs73460496	0.91[ASN][1000 genomes]
rs8025100	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8037598	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8038942	0.91[ASN][1000 genomes]
rs8041176	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9744183	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93207200-93211800	Enhancers	Fetal Muscle Trunk	muscle
2	chr15:93207200-93213000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:93207600-93211200	Enhancers	Pancreas	Pancrea
4	chr15:93207600-93211800	Enhancers	Fetal Muscle Leg	muscle
5	chr15:93207800-93211800	Enhancers	Liver	Liver
6	chr15:93207800-93211800	Enhancers	Fetal Stomach	stomach
7	chr15:93208200-93211800	Enhancers	Fetal Heart	heart
8	chr15:93208200-93212000	Enhancers	Fetal Intestine Small	intestine
9	chr15:93208400-93212000	Enhancers	Fetal Kidney	kidney
10	chr15:93208800-93211000	Enhancers	Adipose Nuclei	Adipose
11	chr15:93208800-93211600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:93209000-93211200	Enhancers	GM12878-XiMat	blood
13	chr15:93209000-93211600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:93209200-93211200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:93209200-93211600	Enhancers	Placenta	Placenta
16	chr15:93209400-93211600	Enhancers	Fetal Intestine Large	intestine
17	chr15:93209400-93211800	Enhancers	Left Ventricle	heart
18	chr15:93209400-93211800	Enhancers	Right Atrium	heart
19	chr15:93209400-93212000	Enhancers	Ovary	ovary
20	chr15:93209600-93211000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:93209600-93211800	Enhancers	Right Ventricle	heart
22	chr15:93210000-93211200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr15:93210000-93211200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:93210000-93211200	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr15:93210000-93211200	Flanking Active TSS	A549	lung
26	chr15:93210000-93211600	Enhancers	Psoas Muscle	Psoas
27	chr15:93210000-93211800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:93210000-93211800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr15:93210000-93211800	Enhancers	Lung	lung
30	chr15:93210000-93212000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:93210200-93211000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:93210200-93211000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr15:93210200-93211000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr15:93210200-93211000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:93210200-93211200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
36	chr15:93210200-93211200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr15:93210200-93211600	Enhancers	Fetal Thymus	thymus
38	chr15:93210200-93211800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:93210200-93211800	Enhancers	Gastric	stomach
40	chr15:93210400-93211000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:93210400-93211000	Flanking Active TSS	Rectal Smooth Muscle	rectum
42	chr15:93210400-93211000	Flanking Active TSS	HepG2	liver
43	chr15:93210400-93211000	Enhancers	HUVEC	blood vessel
44	chr15:93210400-93211200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:93210400-93211200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:93210400-93211200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
47	chr15:93210400-93211200	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr15:93210400-93211200	Enhancers	Stomach Mucosa	stomach
49	chr15:93210400-93211800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:93210400-93211800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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