Variant report

Variant	rs7171211
Chromosome Location	chr15:93233870-93233871
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93195290..93199072-chr15:93233123..93237070,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11857315	0.86[JPT][hapmap]
rs1530026	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs16947147	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16947163	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs172263	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1874507	1.00[CHB][hapmap]
rs285722	0.83[ASN][1000 genomes]
rs285733	1.00[JPT][hapmap]
rs285747	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs285748	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs285750	0.83[ASN][1000 genomes]
rs285753	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs389334	1.00[JPT][hapmap]
rs438230	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57086675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58176634	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58676532	1.00[ASN][1000 genomes]
rs58969800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61243196	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61315665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166295	1.00[AFR][1000 genomes]
rs7172179	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7174458	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460426	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73460450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73460492	1.00[ASN][1000 genomes]
rs73460496	1.00[ASN][1000 genomes]
rs8025100	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8037598	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038942	1.00[ASN][1000 genomes]
rs8041176	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs89062	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9744183	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1036897	chr15:93211991-93239388	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93226000-93234000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:93232400-93237400	Weak transcription	Ovary	ovary
3	chr15:93232600-93240400	Weak transcription	Aorta	Aorta
4	chr15:93233000-93242200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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