Variant report

Variant	rs58185477
Chromosome Location	chr6:33815823-33815824
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57543896	1.00[AMR][1000 genomes]
rs73412187	1.00[AMR][1000 genomes]
rs73414116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33805400-33833400	Weak transcription	Right Atrium	heart
2	chr6:33806600-33818200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:33807200-33819400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33808600-33818800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:33808600-33819400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:33809600-33823200	Weak transcription	Spleen	Spleen
7	chr6:33810800-33819200	Weak transcription	A549	lung
8	chr6:33811200-33818200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:33811600-33816200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:33811800-33818600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:33811800-33819200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:33813600-33816400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:33813800-33816000	Weak transcription	Placenta	Placenta
14	chr6:33815400-33818000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:33815600-33816000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:33815600-33817400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:33815800-33816400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:33815800-33816400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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