Variant report

Variant	rs73414116
Chromosome Location	chr6:33805596-33805597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57543896	1.00[AMR][1000 genomes]
rs58185477	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412187	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33797200-33805600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33801400-33809400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:33801600-33806000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:33803000-33806000	Weak transcription	A549	lung
5	chr6:33803200-33805800	Weak transcription	Esophagus	oesophagus
6	chr6:33804000-33809000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:33804200-33805800	Weak transcription	K562	blood
8	chr6:33805000-33809200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:33805200-33805800	Enhancers	NHEK	skin
10	chr6:33805200-33806000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:33805200-33808600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:33805400-33805600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr6:33805400-33806000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:33805400-33806000	Enhancers	Right Ventricle	heart
15	chr6:33805400-33808200	Enhancers	Osteobl	bone
16	chr6:33805400-33809400	Enhancers	HMEC	breast
17	chr6:33805400-33809400	Enhancers	NHLF	lung
18	chr6:33805400-33833400	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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