Variant report

Variant	rs58190374
Chromosome Location	chr13:110824294-110824295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11838386	1.00[AMR][1000 genomes]
rs11838788	1.00[AMR][1000 genomes]
rs11841587	1.00[AMR][1000 genomes]
rs56896070	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73609595	1.00[AMR][1000 genomes]
rs73611419	1.00[AMR][1000 genomes]
rs73611451	1.00[AMR][1000 genomes]
rs73611453	1.00[AMR][1000 genomes]
rs73611465	1.00[AMR][1000 genomes]
rs73611475	1.00[AMR][1000 genomes]
rs73611484	1.00[AMR][1000 genomes]
rs73611487	1.00[AMR][1000 genomes]
rs73611489	1.00[AMR][1000 genomes]
rs9301446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1045170	chr13:110815422-110836716	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv456116	chr13:110818598-110856153	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv563101	chr13:110818598-110856153	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110791200-110825600	Weak transcription	Esophagus	oesophagus
2	chr13:110791400-110825800	Weak transcription	A549	lung
3	chr13:110791400-110868400	Weak transcription	Psoas Muscle	Psoas
4	chr13:110795800-110826000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:110798400-110825400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:110798800-110825600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:110798800-110853200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:110799600-110840200	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:110800000-110824800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:110800000-110825800	Strong transcription	Ovary	ovary
11	chr13:110800200-110837800	Strong transcription	NH-A	brain
12	chr13:110800600-110834200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr13:110802400-110842800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr13:110803000-110834200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:110803000-110840400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:110803200-110826000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:110803200-110839800	Weak transcription	NHDF-Ad	bronchial
18	chr13:110803200-110839800	Strong transcription	Osteobl	bone
19	chr13:110803600-110840000	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr13:110804000-110825800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr13:110804800-110825200	Weak transcription	Brain Anterior Caudate	brain
22	chr13:110806600-110860400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr13:110807800-110826200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr13:110809200-110840000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:110809400-110824800	Weak transcription	Fetal Brain Female	brain
26	chr13:110809600-110828000	Weak transcription	Fetal Brain Male	brain
27	chr13:110809800-110831200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr13:110810200-110866400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr13:110810400-110826000	Strong transcription	Aorta	Aorta
30	chr13:110810600-110825600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:110811000-110840200	Strong transcription	HUVEC	blood vessel
32	chr13:110811600-110830600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr13:110811800-110838800	Strong transcription	Right Ventricle	heart
34	chr13:110812000-110838800	Strong transcription	Left Ventricle	heart
35	chr13:110812400-110825600	Weak transcription	Fetal Heart	heart
36	chr13:110813800-110826400	Weak transcription	Brain Angular Gyrus	brain
37	chr13:110814200-110830200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr13:110814800-110825800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr13:110815400-110824400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr13:110815600-110824400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr13:110816200-110840400	Strong transcription	Adipose Nuclei	Adipose
42	chr13:110817400-110824800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr13:110817600-110825400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr13:110818400-110825200	Weak transcription	Brain Hippocampus Middle	brain
45	chr13:110818600-110824400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr13:110818800-110824800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr13:110820600-110832200	Strong transcription	HSMMtube	muscle
48	chr13:110821000-110839400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:110821200-110826000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr13:110821200-110831000	Strong transcription	NHLF	lung

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