Variant report

Variant	rs73611489
Chromosome Location	chr13:110869101-110869102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11838386	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11838788	1.00[AMR][1000 genomes]
rs11841587	1.00[AMR][1000 genomes]
rs56896070	1.00[AMR][1000 genomes]
rs58190374	1.00[AMR][1000 genomes]
rs73609595	1.00[AMR][1000 genomes]
rs73611419	1.00[AMR][1000 genomes]
rs73611451	1.00[AMR][1000 genomes]
rs73611453	1.00[AMR][1000 genomes]
rs73611465	1.00[AMR][1000 genomes]
rs73611475	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73611484	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73611487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9301446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1182	chr13:110829691-110875029	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110829600-110874400	Weak transcription	A549	lung
2	chr13:110829800-110869600	Weak transcription	Small Intestine	intestine
3	chr13:110830000-110870800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr13:110830200-110869600	Weak transcription	Fetal Brain Male	brain
5	chr13:110836400-110874200	Weak transcription	Esophagus	oesophagus
6	chr13:110840800-110870200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:110846400-110879800	Weak transcription	Pancreas	Pancrea
8	chr13:110852000-110869800	Weak transcription	Brain Germinal Matrix	brain
9	chr13:110853600-110879800	Weak transcription	Gastric	stomach
10	chr13:110861400-110870800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr13:110862800-110869600	Weak transcription	HMEC	breast
12	chr13:110863800-110869200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:110865200-110871400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:110865400-110874400	Weak transcription	Colonic Mucosa	Colon
15	chr13:110866000-110873400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:110866200-110874000	Weak transcription	NHEK	skin
17	chr13:110866200-110882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr13:110866400-110871000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr13:110866400-110885000	Weak transcription	Fetal Intestine Large	intestine
20	chr13:110866600-110871000	Enhancers	Left Ventricle	heart
21	chr13:110866600-110874200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr13:110866600-110874200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:110866600-110874400	Weak transcription	Fetal Intestine Small	intestine
24	chr13:110866800-110870000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr13:110866800-110870000	Enhancers	Right Ventricle	heart
26	chr13:110866800-110871400	Enhancers	Colon Smooth Muscle	Colon
27	chr13:110867000-110871800	Enhancers	Fetal Lung	lung
28	chr13:110867200-110869600	Weak transcription	Spleen	Spleen
29	chr13:110867200-110871000	Enhancers	Adipose Nuclei	Adipose
30	chr13:110867200-110871600	Enhancers	Rectal Smooth Muscle	rectum
31	chr13:110867200-110871800	Enhancers	Fetal Muscle Leg	muscle
32	chr13:110867400-110870000	Enhancers	Fetal Stomach	stomach
33	chr13:110867800-110870600	Weak transcription	Fetal Muscle Trunk	muscle
34	chr13:110867800-110870800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr13:110868000-110869800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr13:110868000-110870000	Enhancers	Duodenum Mucosa	Duodenum
37	chr13:110868000-110870200	Enhancers	Muscle Satellite Cultured Cells	--
38	chr13:110868000-110871200	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr13:110868000-110871400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr13:110868000-110871600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr13:110868000-110871800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr13:110868200-110869200	Enhancers	NH-A	brain
43	chr13:110868200-110869400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:110868200-110869600	Enhancers	HSMM	muscle
45	chr13:110868200-110869600	Enhancers	HUVEC	blood vessel
46	chr13:110868200-110869800	Enhancers	Ovary	ovary
47	chr13:110868200-110870000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr13:110868200-110870200	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr13:110868200-110870200	Enhancers	Brain Angular Gyrus	brain
50	chr13:110868200-110870800	Enhancers	Brain Inferior Temporal Lobe	brain

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