Variant report

Variant	rs581943
Chromosome Location	chr11:84696819-84696820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10898336	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1227843	0.83[EUR][1000 genomes]
rs2155410	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2155411	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2155412	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2252376	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2444254	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2509053	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs527389	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs543740	0.81[EUR][1000 genomes]
rs567594	0.80[EUR][1000 genomes]
rs568641	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs573650	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs594122	0.81[EUR][1000 genomes]
rs597592	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs632351	0.81[EUR][1000 genomes]
rs648506	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs650374	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs652830	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs658749	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592220	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6592221	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6592222	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs675160	0.81[EUR][1000 genomes]
rs675217	0.81[EUR][1000 genomes]
rs685294	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs688329	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs689226	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs694142	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7127990	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898041	chr11:84642163-84722252	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1054310	chr11:84661681-84702723	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84696400-84697000	Weak transcription	Fetal Brain Male	brain

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