Variant report

Variant	rs675160
Chromosome Location	chr11:84818270-84818271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84817815..84819483-chr11:84822331..84824388,2	K562	blood:
2	chr11:84815271..84817950-chr11:84818250..84820522,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10501586	0.92[ASN][1000 genomes]
rs10898359	0.90[ASN][1000 genomes]
rs11234273	0.81[ASN][1000 genomes]
rs1227842	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1227843	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1238728	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12792714	0.84[EUR][1000 genomes]
rs1377302	0.88[ASN][1000 genomes]
rs1377303	0.88[ASN][1000 genomes]
rs1452928	0.87[ASN][1000 genomes]
rs1826613	0.87[ASN][1000 genomes]
rs2252376	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2444254	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2453151	0.82[EUR][1000 genomes]
rs2509053	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2513242	0.82[EUR][1000 genomes]
rs490286	0.90[ASN][1000 genomes]
rs527389	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs540153	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs542892	0.82[EUR][1000 genomes]
rs543740	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs555156	0.83[EUR][1000 genomes]
rs555259	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs560214	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs560587	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs567594	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs568330	0.80[EUR][1000 genomes]
rs568641	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs573650	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs581943	0.81[EUR][1000 genomes]
rs589093	0.90[ASN][1000 genomes]
rs592166	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs593800	0.81[EUR][1000 genomes]
rs594122	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs595435	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs601375	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs605652	0.81[EUR][1000 genomes]
rs617231	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs626013	0.83[EUR][1000 genomes]
rs626531	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs631370	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs632351	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs633562	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs635432	0.82[AMR][1000 genomes]
rs650374	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs652830	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs658749	0.83[EUR][1000 genomes]
rs660274	0.83[EUR][1000 genomes]
rs675217	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679745	0.90[ASN][1000 genomes]
rs685294	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs694142	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7102107	0.88[ASN][1000 genomes]
rs7118119	0.88[ASN][1000 genomes]
rs7127990	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9634002	0.88[ASN][1000 genomes]
rs9634003	0.88[ASN][1000 genomes]
rs9634004	0.88[ASN][1000 genomes]
rs9634018	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84816400-84820000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:84817000-84819800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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