Variant report

Variant	rs560587
Chromosome Location	chr11:84821387-84821388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10898364	0.80[ASN][1000 genomes]
rs1227842	0.85[EUR][1000 genomes]
rs1227843	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1238728	0.85[EUR][1000 genomes]
rs12792714	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2252376	0.83[EUR][1000 genomes]
rs2444254	0.83[EUR][1000 genomes]
rs2453151	0.87[EUR][1000 genomes]
rs2509053	0.83[EUR][1000 genomes]
rs2513242	0.87[EUR][1000 genomes]
rs490286	0.81[EUR][1000 genomes]
rs527389	0.86[EUR][1000 genomes]
rs540153	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs542892	0.89[EUR][1000 genomes]
rs543740	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs555156	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs555259	0.82[EUR][1000 genomes]
rs560214	0.85[EUR][1000 genomes]
rs567594	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs568330	0.84[EUR][1000 genomes]
rs568641	0.91[EUR][1000 genomes]
rs573650	0.88[EUR][1000 genomes]
rs578782	0.80[EUR][1000 genomes]
rs589093	0.81[EUR][1000 genomes]
rs592166	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs593800	0.87[EUR][1000 genomes]
rs594122	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs595435	0.85[EUR][1000 genomes]
rs605652	0.87[EUR][1000 genomes]
rs617231	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs626013	0.87[EUR][1000 genomes]
rs626531	0.87[EUR][1000 genomes]
rs631370	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs632351	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs633562	0.87[EUR][1000 genomes]
rs635432	0.90[AMR][1000 genomes]
rs650374	0.88[EUR][1000 genomes]
rs652830	0.92[EUR][1000 genomes]
rs658749	0.82[EUR][1000 genomes]
rs660274	0.87[EUR][1000 genomes]
rs666735	0.81[ASN][1000 genomes]
rs675160	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs675217	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs685294	0.86[EUR][1000 genomes]
rs694142	0.87[EUR][1000 genomes]
rs7127990	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84820000-84821400	Flanking Active TSS	GM12878-XiMat	blood
2	chr11:84820000-84823200	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:84821200-84821600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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