Variant report

Variant	rs10898364
Chromosome Location	chr11:84824669-84824670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10501586	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs10898350	0.87[CEU][hapmap]
rs10898360	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs11234273	0.83[CEU][hapmap]
rs1377302	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs1377303	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs1452928	0.82[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs1823777	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs1826613	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs2453151	1.00[CHB][hapmap]
rs490286	0.82[CHB][hapmap];0.90[AFR][1000 genomes]
rs4944507	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs540153	0.93[ASN][1000 genomes]
rs542892	0.82[CHB][hapmap]
rs543740	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs555156	0.82[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs560214	0.82[CHB][hapmap]
rs560587	0.80[ASN][1000 genomes]
rs567594	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs578782	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs589093	0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs592166	1.00[CHB][hapmap];0.80[YRI][hapmap];0.93[ASN][1000 genomes]
rs593800	1.00[CHB][hapmap]
rs594122	0.86[ASN][1000 genomes]
rs595435	0.82[CHB][hapmap]
rs601375	0.82[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs614689	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs617231	0.80[YRI][hapmap]
rs630948	0.82[CHB][hapmap]
rs631370	0.80[YRI][hapmap]
rs632351	0.83[ASN][1000 genomes]
rs641958	1.00[CHB][hapmap]
rs660274	1.00[CHB][hapmap]
rs666735	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs675217	0.82[CHB][hapmap]
rs686009	0.82[CHB][hapmap]
rs7102107	0.82[CEU][hapmap]
rs7110248	0.83[CEU][hapmap]
rs7118119	0.82[CEU][hapmap]
rs7126522	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs7948646	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9634002	0.83[CEU][hapmap]
rs9634003	0.83[CEU][hapmap]
rs9634004	0.83[CEU][hapmap]
rs9634018	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84821600-84825000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:84823000-84828000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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