Variant report

Variant	rs10898350
Chromosome Location	chr11:84766288-84766289
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84760678..84762987-chr11:84764753..84766897,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10501586	0.93[CEU][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10898359	0.82[EUR][1000 genomes]
rs10898360	0.87[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10898364	0.87[CEU][hapmap]
rs11234273	0.87[CEU][hapmap]
rs11823251	0.81[EUR][1000 genomes]
rs1377302	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs1377303	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs1823777	0.85[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs1826613	0.85[CEU][hapmap]
rs2453151	1.00[JPT][hapmap]
rs4944507	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs540153	0.83[ASN][1000 genomes]
rs542892	1.00[JPT][hapmap]
rs543740	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs555156	1.00[JPT][hapmap]
rs567594	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs568641	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs592166	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs593800	1.00[JPT][hapmap]
rs594122	0.83[ASN][1000 genomes]
rs607864	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs621007	0.91[YRI][hapmap]
rs630948	0.85[YRI][hapmap]
rs632351	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs641958	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs660274	1.00[JPT][hapmap]
rs666735	1.00[JPT][hapmap]
rs689226	0.80[YRI][hapmap]
rs7102107	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7110248	0.87[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7118119	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs7126522	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7948646	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs9634002	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9634003	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs9634004	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9634018	0.85[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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