Variant report

Variant	rs10501586
Chromosome Location	chr11:84756077-84756078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84750639..84752620-chr11:84754807..84756706,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10898350	0.93[CEU][hapmap];0.83[YRI][hapmap]
rs10898359	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898360	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs10898364	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs11234273	0.94[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11823251	0.81[EUR][1000 genomes]
rs1227842	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1227843	0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.97[ASN][1000 genomes]
rs1237921	0.89[YRI][hapmap]
rs1238728	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1377302	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1377303	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1452928	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap]
rs1823777	0.94[CEU][hapmap];0.82[CHB][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap]
rs1826613	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs1940122	0.93[MKK][hapmap];0.92[YRI][hapmap]
rs1940133	0.96[MKK][hapmap];0.92[YRI][hapmap]
rs2253167	0.91[YRI][hapmap]
rs2444255	0.85[YRI][hapmap]
rs2453151	0.82[CHB][hapmap]
rs2509053	0.87[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap]
rs3862779	0.91[YRI][hapmap]
rs490286	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4944507	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap]
rs527389	0.90[MKK][hapmap]
rs543740	0.92[YRI][hapmap]
rs555259	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs560214	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs567594	0.92[YRI][hapmap]
rs568641	0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs574671	0.92[YRI][hapmap]
rs575189	0.92[YRI][hapmap]
rs578782	0.82[CHB][hapmap]
rs589093	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs592166	0.82[CHB][hapmap];0.83[MKK][hapmap]
rs593800	0.82[CHB][hapmap]
rs595435	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs601375	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs614689	0.82[CHB][hapmap]
rs617231	0.85[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.90[MKK][hapmap];0.92[ASN][1000 genomes]
rs625495	1.00[MKK][hapmap];0.92[YRI][hapmap]
rs626531	0.85[CHB][hapmap]
rs630948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs631370	0.85[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.84[MKK][hapmap];0.90[ASN][1000 genomes]
rs632351	0.84[AFR][1000 genomes]
rs633562	0.90[ASN][1000 genomes]
rs635032	0.96[MKK][hapmap]
rs641655	0.85[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs641958	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs643891	0.96[MKK][hapmap]
rs646324	0.91[YRI][hapmap]
rs646502	0.80[YRI][hapmap]
rs651661	0.91[YRI][hapmap]
rs652830	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs660274	0.82[CHB][hapmap]
rs666735	0.82[CHB][hapmap]
rs675160	0.92[ASN][1000 genomes]
rs675217	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.92[ASN][1000 genomes]
rs679745	0.85[CHB][hapmap];0.90[CHD][hapmap];0.87[ASN][1000 genomes]
rs686009	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs687695	0.96[MKK][hapmap];0.92[YRI][hapmap]
rs688329	0.85[YRI][hapmap]
rs689226	0.89[YRI][hapmap]
rs7102107	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7110248	0.94[CEU][hapmap]
rs7118119	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7126522	0.94[CEU][hapmap]
rs7127990	0.93[MKK][hapmap];0.92[YRI][hapmap]
rs7948646	0.94[CEU][hapmap];0.82[CHB][hapmap];0.90[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs9634002	0.94[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9634003	0.94[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9634004	0.94[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9634018	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10501586	C11orf73	cis	cerebellum	SCAN
rs10501586	ANKRD42	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84755800-84756200	Weak transcription	Fetal Brain Female	brain

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